Advanced Computing and Oncology Lab: Publications

Advanced Computing and Oncology Lab: Publications

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View a full listing of Advanced Computing and Oncology Lab: Publications’ journal articles.

Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA. Abbosh C, Frankell AM, Harrison T, Kisistok J, Garnett A, Johnson L, Veeriah S, Moreau M, Chesh A, Chaunzwa TL, Weiss J, Schroeder MR, Ward S, Grigoriadis K, Shahpurwalla A, Litchfield K, Puttick C, Biswas D, Karasaki T, Black JRM, Martínez-Ruiz C, Bakir MA, Pich O, Watkins TBK, Lim EL, Huebner A, Moore DA, Godin-Heymann N, L’Hernault A, Bye H, Odell A, Roberts P, Gomes F, Patel AJ, Manzano E, Hiley CT, Carey N, Riley J, Cook DE, Hodgson D, Stetson D, Barrett JC, Kortlever RM, Evan GI, Hackshaw A, Daber RD, Shaw JA, Aerts HJWL, Licon A, Stahl J, Jamal-Hanjani M; TRACERx Consortium; Birkbak NJ, McGranahan N, Swanton C. Nature. 2023 Apr;616(7957):553-562. doi: 10.1038/s41586-023-05776-4. Epub 2023 Apr 13.

Foundation model for cancer imaging biomarkers.Pai S, Bontempi D, Hadzic I, Prudente V, Sokač M, Chaunzwa TL, Bernatz S, Hosny A, Mak RH, Birkbak NJ, Aerts HJWL. Nat Mach Intell. 2024;6(3):354-367. doi: 10.1038/s42256-024-00807-9. Epub 2024 Mar 15.

Body Composition in Advanced Non-Small Cell Lung Cancer Treated With Immunotherapy.Chaunzwa TL, Qian JM, Li Q, Ricciuti B, Nuernberg L, Johnson JW, Weiss J, Zhang Z, MacKay J, Kagiampakis I, Bikiel D, Di Federico A, Alessi JV, Mak RH, Jacob E, Awad MM, Aerts HJWL. JAMA Oncol. 2024 Jun 1;10(6):773-783. doi: 10.1001/jamaoncol.2024.1120.

Large language models to identify social determinants of health in electronic health records.Guevara M, Chen S, Thomas S, Chaunzwa TL, Franco I, Kann BH, Moningi S, Qian JM, Goldstein M, Harper S, Aerts HJWL, Catalano PJ, Savova GK, Mak RH, Bitterman DS. NPJ Digit Med. 2024 Jan 11;7(1):6. doi: 10.1038/s41746-023-00970-0.

Clinical Informatics Approaches to Understand and Address Cancer Disparities.Chaunzwa TL, Del Rey MQ, Bitterman DS. Yearb Med Inform. 2022 Aug;31(1):121-130. doi: 10.1055/s-0042-1742511. Epub 2022 Dec 4.

A foundation model for generalized brain MRI analysis.Tak D, Garomsa BA, Chaunzwa TL, Zapaishchykova A, Climent Pardo JC, Ye Z, Zielke J, Ravipati Y, Vajapeyam S, Mahootiha M, Smith C, Familiar AM, Liu KX, Prabhu S, Bandopadhayay P, Nabavizadeh A, Mueller S, Aerts HJ, Huang RY, Poussaint TY, Kann BH. medRxiv [Preprint]. 2024 Dec 3:2024.12.02.24317992. doi: 10.1101/2024.12.02.24317992.

Deep learning classification of lung cancer histology using CT images.Chaunzwa TL, Hosny A, Xu Y, Shafer A, Diao N, Lanuti M, Christiani DC, Mak RH, Aerts HJWL. Sci Rep. 2021 Mar 9;11(1):5471. doi: 10.1038/s41598-021-84630-x.

Long-Term Neurocognitive Outcomes in Sagittal Synostosis: The Impact of Reoperation.Chuang C, Chaunzwa TL, Wu R, Singh A, Patel A, Yang JF, Hashim PW, Travieso R, Terner JS, Mayes LC, Duncan CC, Jane JA Jr, Lin KY, Bridgett DJ, Persing JA. J Craniofac Surg. 2021 Jan-Feb 01;32(1):58-61. doi: 10.1097/SCS.0000000000006909.

Longitudinal risk prediction for pediatric glioma with temporal deep learning.Tak D, Garomsa BA, Zapaishchykova A, Ye Z, Vajapeyam S, Mahootiha M, Climent Pardo JC, Smith C, Familiar AM, Chaunzwa T, Liu KX, Prabhu S, Bandopadhayay P, Nabavizadeh A, Mueller S, Aerts HJ, Haas-Kogan D, Poussaint TY, Kann BH. medRxiv [Preprint]. 2024 Jun 28:2024.06.04.24308434. doi: 10.1101/2024.06.04.24308434.

Observer preference of artificial intelligence-generated versus clinical prostate contours for ultrasound-based high dose rate brachytherapy.King MT, Kehayias CE, Chaunzwa T, Rosen DB, Mahal AR, Wallburn TD, Milligan MG, Dyer MA, Nguyen PL, Orio PF, Harris TC, Buzurovic I, Guthier CV. Med Phys. 2023 Oct;50(10):5935-5943. doi: 10.1002/mp.16716. Epub 2023 Sep 4.

Portable microfluidic chip for detection of Escherichia coli in produce and blood.Wang S, Inci F, Chaunzwa TL, Ramanujam A, Vasudevan A, Subramanian S, Chi Fai Ip A, Sridharan B, Gurkan UA, Demirci U. Int J Nanomedicine. 2012;7:2591-600. doi: 10.2147/IJN.S29629. Epub 2012 May 29.

Laser Thermal Ablation for Metastases Failing Radiosurgery: A Multicentered Retrospective Study.Chaunzwa TL, Deng D, Leuthardt EC, Tatter SB, Mohammadi AM, Barnett GH, Chiang VL. Neurosurgery. 2018 Jan 1;82(1):56-63. doi: 10.1093/neuros/nyx142.

Statin Use, Heart Radiation Dose, and Survival in Locally Advanced Lung Cancer.Atkins KM, Bitterman DS, Chaunzwa TL, Williams CL, Rahman R, Kozono DE, Baldini EH, Aerts HJWL, Tamarappoo BK, Hoffmann U, Nohria A, Mak RH. Pract Radiat Oncol. 2021 Sep-Oct;11(5):e459-e467. doi: 10.1016/j.prro.2020.12.006. Epub 2021 Jan 18.

Elevated Coronary Artery Calcium Quantified by a Validated Deep Learning Model From Lung Cancer Radiotherapy Planning Scans Predicts Mortality.Atkins KM, Weiss J, Zeleznik R, Bitterman DS, Chaunzwa TL, Huynh E, Guthier C, Kozono DE, Lewis JH, Tamarappoo BK, Nohria A, Hoffmann U, Aerts HJWL, Mak RH. JCO Clin Cancer Inform. 2022 Jan;6:e2100095. doi: 10.1200/CCI.21.00095.

Mean Heart Dose Is an Inadequate Surrogate for Left Anterior Descending Coronary Artery Dose and the Risk of Major Adverse Cardiac Events in Lung Cancer Radiation Therapy.Atkins KM, Bitterman DS, Chaunzwa TL, Kozono DE, Baldini EH, Aerts HJWL, Tamarappoo BK, Hoffmann U, Nohria A, Mak RH. Int J Radiat Oncol Biol Phys. 2021 Aug 1;110(5):1473-1479. doi: 10.1016/j.ijrobp.2021.03.005. Epub 2021 Mar 10.

Cardiac Radiation Dose, Cardiac Disease, and Mortality in Patients With Lung Cancer.Atkins KM, Rawal B, Chaunzwa TL, Lamba N, Bitterman DS, Williams CL, Kozono DE, Baldini EH, Chen AB, Nguyen PL, D’Amico AV, Nohria A, Hoffmann U, Aerts HJWL, Mak RH. J Am Coll Cardiol. 2019 Jun 18;73(23):2976-2987. doi: 10.1016/j.jacc.2019.03.500.

Hemolytic Anemia and Gastric Carcinoid in a Russian Seafarer: Highlighting the Role of Diagnostic Technologies in Modern Clinical Practice.Chaunzwa TL, O’Shea J, Boggs NA, Schwartz JI, Gibson J, Gielissen KA. Yale J Biol Med. 2018 Sep 21;91(3):243-246. eCollection 2018 Sep.

Association of Left Anterior Descending Coronary Artery Radiation Dose With Major Adverse Cardiac Events and Mortality in Patients With Non-Small Cell Lung Cancer.Atkins KM, Chaunzwa TL, Lamba N, Bitterman DS, Rawal B, Bredfeldt J, Williams CL, Kozono DE, Baldini EH, Nohria A, Hoffmann U, Aerts HJWL, Mak RH. JAMA Oncol. 2021 Feb 1;7(2):206-219. doi: 10.1001/jamaoncol.2020.6332.